Unfortunately, the way that Apache merges the configuration directives is different for mod_rewrite and <Location> / <Directory> directives.
To work around basic auth in VirtualHosts, the challenge override Include had to be split in two. The first part handles overrides for RewriteRule and the other part will handle overrides for <Directory> and <Location> directives.
* Fix docstring quote spacing
* Remove unneeded directives
* Enable mod_rewrite
* Remove ifmod rewrite
* Use stricter rewriterule
* Uncomment tests
* Fix order args
* Remove S which doesn't seem to work across contexts
* Use double backslash to make pylint
* Fix enmod test
* Fix http-01 tests
* Test for rewrite
* check for Include in vhost
* add test_same_vhost
* Don't add includes twice
* Include default vhosts in search
* Respect port in find_best_http_vhost
* Add find_best_http_vhost port test
* Filter by port in http01
* Add a simple version of HTTP01
* remove cert from chall name
* make directory work on 2.2
* cleanup challenges when finished
* import shutil
* fixup perform and cleanup tests
* Add tests for http_01.py
